Pubchem MCP Server

v1.0.0Data Processingstable

Enables large language models to correctly query molecular databases and generate structure files

pubchemmcpai-integration
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About

Enables large language models to correctly query molecular databases and generate structure files

Features

  • Enables large language models to correctly query molecular d

Use Cases

Enables large language models to correctly query molecular databases and generat
PhelanShao

Maintainer

LicenseMIT
Languagepython
Versionv1.0.0
UpdatedApr 22, 2026
Statushealthy
Maintenanceactive

Works with

ClaudeOpenAIwindowsmacoslinux

Installation

Manual Installation

npx pubchem

Examples

Basic Configuration

Configure Pubchem MCP Server

npx pubchem

Configuration

Configuration Details

Config File

claude_desktop_config.json

Web UI

Not available

Security

Authentication

RequiredNo

Features

Data Encryption
Audit Logging
RBAC Support

Performance

Response Metrics

Response Time< 200ms
ThroughputMedium

Resource Usage

Memory UsageLow
CPU UsageLow

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Quick Config Preview

{ "mcpServers": { "pubchem": { "command": "npx", "args": ["-y", "pubchem"] } } }

Add this to your claude_desktop_config.json or .cursor/mcp.json

Read the full setup guide →

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