VMD
Enables control of VMD2 for molecular dynamics analysis through natural language, allowing users to load structures, set representations, measure distances, compute RMSD, and render images without Tcl scripting.
What is VMD?
VMD is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to enables control of vmd2 for molecular dynamics analysis through natural language, allowing users to load structures, set representations, measure distances, compute rmsd, and render images without tcl...
Enables control of VMD2 for molecular dynamics analysis through natural language, allowing users to load structures, set representations, measure distances, compute RMSD, and render images without Tcl scripting.
This server falls under the Data Science & ML category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- Enables control of VMD2 for molecular dynamics analysis thro
Use Cases
Maintainer
Works with
Installation
Manual Installation
npx vmdConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about VMD
What is VMD?
VMD is a Model Context Protocol (MCP) server that enables control of vmd2 for molecular dynamics analysis through natural language, allowing users to load structures, set representations, measure distances, compute rmsd, and render images without tcl scripting. It connects AI assistants to external tools and data sources through a standardized interface.
How do I install VMD?
Follow the installation instructions on the VMD GitHub repository. Clone the repo, install dependencies, and add the server config to your AI client.
Which AI clients work with VMD?
VMD works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is VMD free to use?
Yes, VMD is open source and available under the MIT license. You can use it freely in both personal and commercial projects.
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Set Up VMD in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
Ready to use VMD?
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