SCMCP
An MCP server that enables scRNA-Seq analysis through natural language, providing tools for data preprocessing, clustering, and biological visualization. It supports both predefined function execution and a flexible code mode powered by a Jupyter bac
What is SCMCP?
SCMCP is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to mcp server that enables scrna-seq analysis through natural language, providing tools for data preprocessing, clustering, and biological visualization. it supports both predefined function execution an...
An MCP server that enables scRNA-Seq analysis through natural language, providing tools for data preprocessing, clustering, and biological visualization. It supports both predefined function execution and a flexible code mode powered by a Jupyter bac
This server falls under the Data Science & ML category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- read_h5ad
- read_10x_h5
- read_10x_mtx
Use Cases
Maintainer
Works with
Installation
NPM
npx -y scmcpManual Installation
npx -y scmcpConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about SCMCP
What is SCMCP?
SCMCP is a Model Context Protocol (MCP) server that mcp server that enables scrna-seq analysis through natural language, providing tools for data preprocessing, clustering, and biological visualization. it supports both predefined function execution and a flexible code mode powered by a jupyter bac It connects AI assistants to external tools and data sources through a standardized interface.
How do I install SCMCP?
Install via npm with the command: npx -y scmcp. Then add the server configuration to your AI client's JSON config file (e.g., claude_desktop_config.json or .cursor/mcp.json).
Which AI clients work with SCMCP?
SCMCP works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is SCMCP free to use?
Yes, SCMCP is open source and available under the BSD 3-Clause license. You can use it freely in both personal and commercial projects.
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Set Up SCMCP in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
Ready to use SCMCP?
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