Scmcp MCP Server

v1.0.0Data Processingstable

Read .h5ad-formatted hdf5 file

data-science-tools
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About

Read .h5ad-formatted hdf5 file

Features

  • read_h5ad
  • read_10x_h5
  • read_10x_mtx
  • read_text
  • write_h5ad

Use Cases

Read .h5ad-formatted hdf5 file
Read 10x-Genomics-formatted hdf5 file
Read 10x-Genomics-formatted mtx directory.
Read gene expression from .txt, .csv, .tsv file.
Write AnnData objects inot .h5ad-formatted hdf5 file
Community

Maintainer

LicenseMIT
Languagetypescript
Versionv1.0.0
UpdatedN/A
Statushealthy
Maintenanceactive

Works with

ClaudeOpenAIwindowsmacoslinux

Installation

NPM

npx -y scmcp

Manual Installation

npx -y scmcp

Examples

Basic Configuration

Configure Scmcp MCP Server

npx -y scmcp

Configuration

Configuration Details

Config File

claude_desktop_config.json

Web UI

Not available

Security

Authentication

RequiredNo

Features

Data Encryption
Audit Logging
RBAC Support

Performance

Response Metrics

Response Time< 200ms
ThroughputMedium

Resource Usage

Memory UsageLow
CPU UsageLow

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Quick Config Preview

{ "mcpServers": { "scmcp": { "command": "npx", "args": ["-y", "scmcp"] } } }

Add this to your claude_desktop_config.json or .cursor/mcp.json

Read the full setup guide →

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