SAMtools
A Model Control Protocol implementation for SAMtools, providing a standardized interface for working with SAM/BAM/CRAM files.
What is SAMtools?
SAMtools is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to model control protocol implementation for samtools, providing a standardized interface for working with sam/bam/cram files.
A Model Control Protocol implementation for SAMtools, providing a standardized interface for working with SAM/BAM/CRAM files.
This server falls under the Data Science & ML category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- A Model Control Protocol implementation for SAMtools, provid
Use Cases
Maintainer
Works with
Installation
NPM
npx -y samtoolsManual Installation
npx -y samtoolsConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about SAMtools
What is SAMtools?
SAMtools is a Model Context Protocol (MCP) server that model control protocol implementation for samtools, providing a standardized interface for working with sam/bam/cram files. It connects AI assistants to external tools and data sources through a standardized interface.
How do I install SAMtools?
Install via npm with the command: npx -y samtools. Then add the server configuration to your AI client's JSON config file (e.g., claude_desktop_config.json or .cursor/mcp.json).
Which AI clients work with SAMtools?
SAMtools works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is SAMtools free to use?
Yes, SAMtools is open source and available under the MIT license. You can use it freely in both personal and commercial projects.
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Set Up SAMtools in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
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