nf-core MCP Server
Enables users to manage and navigate nf-core bioinformatics pipeline repositories, allowing list, search, and explore operations on pipeline configurations, workflows, and modules.
What is nf-core MCP Server?
nf-core MCP Server is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to enables users to manage and navigate nf-core bioinformatics pipeline repositories, allowing list, search, and explore operations on pipeline configurations, workflows, and modules.
Enables users to manage and navigate nf-core bioinformatics pipeline repositories, allowing list, search, and explore operations on pipeline configurations, workflows, and modules.
This server falls under the Developer Tools category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- Enables users to manage and navigate nf-core bioinformatics
Use Cases
Maintainer
Works with
Installation
Manual Installation
npx nf-core-mcp-serverConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about nf-core MCP Server
What is nf-core MCP Server?
nf-core MCP Server is a Model Context Protocol (MCP) server that enables users to manage and navigate nf-core bioinformatics pipeline repositories, allowing list, search, and explore operations on pipeline configurations, workflows, and modules. It connects AI assistants to external tools and data sources through a standardized interface.
How do I install nf-core MCP Server?
Follow the installation instructions on the nf-core MCP Server GitHub repository. Clone the repo, install dependencies, and add the server config to your AI client.
Which AI clients work with nf-core MCP Server?
nf-core MCP Server works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is nf-core MCP Server free to use?
Yes, nf-core MCP Server is open source and available under the MIT license. You can use it freely in both personal and commercial projects.
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Set Up nf-core MCP Server in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
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