Infercnv
Provides a natural language interface for inferring Copy Number Variations (CNVs) from scRNA-Seq data using the infercnvpy framework. It enables users to perform data preprocessing, CNV inference, and visualization through chromosome heatmaps, UMAP,
What is Infercnv?
Infercnv is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to provides a natural language interface for inferring copy number variations (cnvs) from scrna-seq data using the infercnvpy framework. it enables users to perform data preprocessing, cnv inference, and...
Provides a natural language interface for inferring Copy Number Variations (CNVs) from scRNA-Seq data using the infercnvpy framework. It enables users to perform data preprocessing, CNV inference, and visualization through chromosome heatmaps, UMAP,
This server falls under the Data Science & ML category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- Provides a natural language interface for inferring Copy Num
Use Cases
Maintainer
Works with
Installation
Manual Installation
npx infercnv-mcpConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about Infercnv
What is Infercnv?
Infercnv is a Model Context Protocol (MCP) server that provides a natural language interface for inferring copy number variations (cnvs) from scrna-seq data using the infercnvpy framework. it enables users to perform data preprocessing, cnv inference, and visualization through chromosome heatmaps, umap, It connects AI assistants to external tools and data sources through a standardized interface.
How do I install Infercnv?
Follow the installation instructions on the Infercnv GitHub repository. Clone the repo, install dependencies, and add the server config to your AI client.
Which AI clients work with Infercnv?
Infercnv works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is Infercnv free to use?
Yes, Infercnv is open source and available under the MIT license. You can use it freely in both personal and commercial projects.
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Set Up Infercnv in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
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