GTEx
Enables AI assistants to query and analyze genomics data from the GTEx Portal through 25 specialized tools for gene expression analysis, eQTL/sQTL associations, and genetic variant lookups across 54 human tissue types.
What is GTEx?
GTEx is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to enables ai assistants to query and analyze genomics data from the gtex portal through 25 specialized tools for gene expression analysis, eqtl/sqtl associations, and genetic variant lookups across 54 h...
Enables AI assistants to query and analyze genomics data from the GTEx Portal through 25 specialized tools for gene expression analysis, eQTL/sQTL associations, and genetic variant lookups across 54 human tissue types.
This server falls under the Data Science & ML category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- Enables AI assistants to query and analyze genomics data fro
Use Cases
Maintainer
Works with
Installation
Manual Installation
npx gtex-mcp-serverConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about GTEx
What is GTEx?
GTEx is a Model Context Protocol (MCP) server that enables ai assistants to query and analyze genomics data from the gtex portal through 25 specialized tools for gene expression analysis, eqtl/sqtl associations, and genetic variant lookups across 54 human tissue types. It connects AI assistants to external tools and data sources through a standardized interface.
How do I install GTEx?
Follow the installation instructions on the GTEx GitHub repository. Clone the repo, install dependencies, and add the server config to your AI client.
Which AI clients work with GTEx?
GTEx works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is GTEx free to use?
Yes, GTEx is open source and available under the MIT license. You can use it freely in both personal and commercial projects.
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Set Up GTEx in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
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