CellRank
Enables natural language interaction for scRNA-Seq analysis including preprocessing, clustering, and visualization using the CellRank library. It allows users and agents to perform complex genomic data tasks through standard MCP clients and framework
What is CellRank?
CellRank is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to enables natural language interaction for scrna-seq analysis including preprocessing, clustering, and visualization using the cellrank library. it allows users and agents to perform complex genomic dat...
Enables natural language interaction for scRNA-Seq analysis including preprocessing, clustering, and visualization using the CellRank library. It allows users and agents to perform complex genomic data tasks through standard MCP clients and framework
This server falls under the Data Science & ML category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- Enables natural language interaction for scRNA-Seq analysis
Use Cases
Maintainer
Works with
Installation
Manual Installation
npx cellrankConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about CellRank
What is CellRank?
CellRank is a Model Context Protocol (MCP) server that enables natural language interaction for scrna-seq analysis including preprocessing, clustering, and visualization using the cellrank library. it allows users and agents to perform complex genomic data tasks through standard mcp clients and framework It connects AI assistants to external tools and data sources through a standardized interface.
How do I install CellRank?
Follow the installation instructions on the CellRank GitHub repository. Clone the repo, install dependencies, and add the server config to your AI client.
Which AI clients work with CellRank?
CellRank works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is CellRank free to use?
Yes, CellRank is open source and available under the MIT license. You can use it freely in both personal and commercial projects.
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Set Up CellRank in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
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