BWA
Enables AI assistants to perform DNA/RNA sequence alignment using BWA (Burrows-Wheeler Aligner), supporting both short and long read alignment to reference genomes with indexing, BWA-MEM, and BWA-backtrack algorithms.
What is BWA?
BWA is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to enables ai assistants to perform dna/rna sequence alignment using bwa (burrows-wheeler aligner), supporting both short and long read alignment to reference genomes with indexing, bwa-mem, and bwa-back...
Enables AI assistants to perform DNA/RNA sequence alignment using BWA (Burrows-Wheeler Aligner), supporting both short and long read alignment to reference genomes with indexing, BWA-MEM, and BWA-backtrack algorithms.
This server falls under the Data Science & ML category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- Enables AI assistants to perform DNA/RNA sequence alignment
Use Cases
Maintainer
Works with
Installation
Manual Installation
npx bwa-mcp-serverConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about BWA
What is BWA?
BWA is a Model Context Protocol (MCP) server that enables ai assistants to perform dna/rna sequence alignment using bwa (burrows-wheeler aligner), supporting both short and long read alignment to reference genomes with indexing, bwa-mem, and bwa-backtrack algorithms. It connects AI assistants to external tools and data sources through a standardized interface.
How do I install BWA?
Follow the installation instructions on the BWA GitHub repository. Clone the repo, install dependencies, and add the server config to your AI client.
Which AI clients work with BWA?
BWA works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is BWA free to use?
Yes, BWA is open source and available under the MIT License license. You can use it freely in both personal and commercial projects.
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Set Up BWA in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
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