BioBTree
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs
What is BioBTree?
BioBTree is a Model Context Protocol (MCP) server that allows AI assistants like Claude, Cursor, and VS Code to unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-re...
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs
This server falls under the Knowledge & Memory category on MCPgee, the world's largest MCP server directory with 33,000+ servers.
Features
- A unified biomedical graph database that integrates 50+ prim
Use Cases
Maintainer
Works with
Installation
Manual Installation
npx biobtreeConfiguration
Configuration Details
claude_desktop_config.json
Performance
Response Metrics
Resource Usage
Frequently Asked Questions about BioBTree
What is BioBTree?
BioBTree is a Model Context Protocol (MCP) server that unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. its native mcp server gives llms It connects AI assistants to external tools and data sources through a standardized interface.
How do I install BioBTree?
Follow the installation instructions on the BioBTree GitHub repository. Clone the repo, install dependencies, and add the server config to your AI client.
Which AI clients work with BioBTree?
BioBTree works with all major MCP-compatible AI clients including Claude Desktop, Claude Code, Cursor, VS Code (GitHub Copilot), Windsurf, and Cline.
Is BioBTree free to use?
Yes, BioBTree is open source and available under the AGPL 3.0 license. You can use it freely in both personal and commercial projects.
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Browse More Knowledge & Memory MCP Servers
Explore all knowledge & memory servers available in the MCPgee directory. Each server includes setup guides for Claude, Cursor, and VS Code.
Set Up BioBTree in Your Editor
Choose your AI client for step-by-step setup instructions.
Quick Config Preview
Add this to your claude_desktop_config.json or .cursor/mcp.json
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